rs108141200 SNP Detail

Summary

• ID
  rs108141200
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66311055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGATGTG CATCACTAGT
  TTTGCATATT TTAACTATCT CTTCTCTTCC ATAAGAATAA TCCTAAACTG GTTGTGTTAG
  TTTTCACATT CAACTTCAGC ACTCGGGAGA CTAAGGCAGG AAAGCTCCTG ACACGCTCAA
  GGCTGGCCTG GGGCGCATGG CAAGACTTGT TCTAAAAAAA AAAAATAGAA AGAATGGAGG
  G
  AGGGGAGGAG GGGGGAGGGG AGGAGGAGGG AGGGGAGGAG GGAAGGGGAG GGGAGAATGA
  GAGGGTGGAT GATGAGAAGC ACATCTGTAA TTTCGTACCT GTGTGGCTGA GGTAGACTGG
  GAGGGTCAGG GCCACATGCT ATATGATCTT GTTTCAAAAA AAAAGCTCTT TGTACTATAA
  TACAAGTCTT CTATTAAAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss131020501	NCBIM37_NT_039649_chr17_66353400	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108141200					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131020501	NCBIM37_NT_039649_chr17_66353400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66311055 () rs orientation: forward

Symbol	Name	Function Class
Ankrd12	ankyrin repeat domain 12	within coordinates
Gm49925	predicted gene, 49925	1645 bp upstream
Tssr145589	transcription start site region 145589	1566 bp upstream
Tssr145590	transcription start site region 145590	1609 bp upstream
Tssr145591	transcription start site region 145591	1636 bp upstream
Tssr145592	transcription start site region 145592	1681 bp upstream