rs108149521 SNP Detail

Summary

• ID
  rs108149521
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41288295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA CACACTGAAA CGGTTGTTGA
  A
  CTATTGTACC CGAGAGGAGA GGACA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322925113	CHEV_9_41185082	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108149521					SNP	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136353044	ENSMUSSNP3469185	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41288295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	201 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677030	regulatory region 677030	1515 bp distal
Rr677031	regulatory region 677031	355 bp distal
Tssr84498	transcription start site region 84498	593 bp downstream
Tssr84499	transcription start site region 84499	565 bp downstream
Tssr84500	transcription start site region 84500	514 bp downstream
Tssr84501	transcription start site region 84501	502 bp downstream
Tssr84502	transcription start site region 84502	91 bp downstream
Tssr84503	transcription start site region 84503	1433 bp upstream