rs108150947 SNP Detail

Summary

• ID
  rs108150947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTGGTT GGAGCCCAAT
  TCAAAGCATT CTAAGAGTCA CAGTTAGCAT CTCTGTTTTC ATCAATGGAG ACTGGCGTCT
  CTGAGCCAGT TGGATGCCCA GGTTTGTCTC TGAAGCCAGC GCTGCCTCAG CGGCTCTCAG
  ACTCTCCCCT CTGTGTACTG GGGACACTTC CCCCCCATTC CACCTCTCCT GAGCCACATG
  Y
  CCTGCTTCGC CCTAACTGCA GATGGTGGCC ACAAGAAGAA CCCCAAACCA GATCTCTTCT
  GGCCCCCAAA TTCAGGGCAA AAACCCTTGT CAGCCTTAAC CCTGGGGGAC CTGGGCTCTG
  ACTCAGTCTC TGCGTGTAGA ATCGGGTGTA AAGGGGGAAG CTCACTGCTA ATCGGGGTCC
  CAGGGGCCTC TACAGTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736189	ENSMUSSNP4010098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108150947					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	803 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	270 bp proximal
Rr603761	regulatory region 603761	1261 bp proximal
Rr603762	regulatory region 603762	1771 bp proximal
Tssr40063	transcription start site region 40063	1024 bp downstream
Tssr40064	transcription start site region 40064	963 bp downstream
Tssr40065	transcription start site region 40065	936 bp downstream
Tssr40066	transcription start site region 40066	832 bp downstream
Tssr40067	transcription start site region 40067	778 bp downstream
Tssr40068	transcription start site region 40068	723 bp downstream
Tssr40069	transcription start site region 40069	596 bp downstream
Tssr40070	transcription start site region 40070	502 bp downstream
Tssr40071	transcription start site region 40071	485 bp downstream
Tssr40072	transcription start site region 40072	440 bp downstream
Tssr40073	transcription start site region 40073	415 bp downstream
Tssr40074	transcription start site region 40074	388 bp downstream
Tssr40075	transcription start site region 40075	364 bp downstream
Tssr40076	transcription start site region 40076	348 bp downstream
Tssr40077	transcription start site region 40077	328 bp downstream
Tssr40078	transcription start site region 40078	1376 bp upstream
Tssr44315	transcription start site region 44315	959 bp upstream
Tssr44316	transcription start site region 44316	861 bp upstream
Tssr44317	transcription start site region 44317	833 bp upstream
Tssr44318	transcription start site region 44318	433 bp upstream
Tssr44319	transcription start site region 44319	535 bp downstream