rs108151404 SNP Detail

Summary

• ID
  rs108151404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85923463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCAGGA GAAAGAACAA
  TGGAGGCGAG AGGGCAGTGA GAGATGTCAA CTCTTCCTGA GGAGTGAAGT GCAGTTTCTA
  ATGGTTTCTT ATATTAACTA GTTAGCTGTG TTCCTTGGCC CAAGAAGAGG AGAGAAGGAG
  TAGATGCTTG TCCTAGTGGG TGGCTGTCTC CACTCCCTTT TCCTAGGATT TTCCCCCTCT
  S
  GTCCAGGTTT TTTTGGGGTC CCAGTCTTGC CTAAGGAGCG TGGTCTTTCC TGGGCTAACT
  TCTTCAGACC TCTCCATGGC TATAAACGCA ATGGAAGAGA GACCAGGGAT GGGATTGTGT
  GAAACTGGAA GTCATTCTCC GAGGGGTGTG AACTGAACCT GCCCATCCTT TCTCAAATAC
  AGGCCTAGAG TTCTAGTTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486764	CHEV_17_86015375	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108151404					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85923463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9588	CpG island 9588	1956 bp distal
Cpgi9589	CpG island 9589	576 bp distal
Cpgi9590	CpG island 9590	544 bp proximal
Cpgi9591	CpG island 9591	1053 bp proximal
Cpgi9592	CpG island 9592	1699 bp proximal
Gm55783	predicted gene, 55783	1300 bp downstream
Gm55784	predicted gene, 55784	753 bp downstream
Gm55785	predicted gene, 55785	667 bp upstream
Rr532266	regulatory region 532266	1800 bp distal
Rr532267	regulatory region 532267	585 bp distal
Rr532268	regulatory region 532268	within coordinates
Rr532269	regulatory region 532269	1008 bp proximal
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr149707	transcription start site region 149707	1223 bp upstream
Tssr149708	transcription start site region 149708	1025 bp upstream
Tssr149709	transcription start site region 149709	977 bp upstream
Tssr149710	transcription start site region 149710	883 bp upstream
Tssr149711	transcription start site region 149711	859 bp upstream
Tssr149712	transcription start site region 149712	573 bp upstream