rs108152539 SNP Detail

Summary

• ID
  rs108152539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41288195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCACATTT CCTTTCTTCT
  CCTCAACCTT GTTAGGTTTT TTTCTAAGTG CCCAGGGGTT GAGGGGTTTT CCTAGCCCCT
  CTCTATCCTC GATCTATTCT GATTTGAATC TCTCTCAGGA TTTGTAACAC TTCCTCTCAT
  TAGGAAAGCT TTGCTAGACT CGCATTCCCT GTCTCTGTAA ACAGGGTTTT TTTTTTTGTT
  K
  TTTTTTTAAT GATTTGTTGT TTTGGGGGTC TCTCTTTTGA ATGTCAGCTC CAAATGTCTT
  AGCTTCTGGG GCTACCTCAC ACACTGAAAC GGTTGTTGAG CTATTGTACC CGAGAGGAGA
  GGACACAGAA ATGGCTCTTT AGAATAATAA TCTCAAAAGG GAGATGAGAA AGACCCCAGA
  GGACAGCCTG TGCTCCTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136353041	ENSMUSSNP1136012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322925112	CHEV_9_41184982	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108152539					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41288195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	101 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677030	regulatory region 677030	1415 bp distal
Rr677031	regulatory region 677031	255 bp distal
Tssr84498	transcription start site region 84498	493 bp downstream
Tssr84499	transcription start site region 84499	465 bp downstream
Tssr84500	transcription start site region 84500	414 bp downstream
Tssr84501	transcription start site region 84501	402 bp downstream
Tssr84502	transcription start site region 84502	within coordinates
Tssr84503	transcription start site region 84503	1533 bp upstream