rs108155251 SNP Detail

Summary

• ID
  rs108155251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45543747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTGTC CCCGGGAAGC
  CTCGGGGCTC GGGGATGCTC CCCGGGAGCC GGGCGACGTT GCAGCAGCGG CCCGTGGAGT
  GCTCCCGGGA CGCCAGGCTC CAGCCTCCTC CTCCTCCCCG CGAGTGGAGA GTGCGGTGGG
  GGGGGGGCGG GGGGAGCATA GAGGACGCTT ACGGTGGGGG ATCCGGGGCC CGGAGACCAG
  R
  ACACTGCTGG GAACCTCCAC CCTGTCCGTT AGCCTGGCAC TTTTCTCTAA AGAAGGTGGC
  CCGGCACACC TGCCGCAGGT GTGTGTGTGT GTGATGCCTC CCGTGGAGTC CTTGCAAAGC
  CCGGCAGCGC CACCCGCGTC CCGGGATGAG ATGGTTGCAA GCGGTCGCTG GCCCCGGGGC
  TCCCTAGCTG ATCAGGTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148962685	ENSMUSSNP4388205	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs108155251					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45543747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Gm56579	predicted gene, 56579	1540 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	532 bp downstream
Rr478672	regulatory region 478672	1579 bp distal
Rr478673	regulatory region 478673	519 bp distal
Rr478674	regulatory region 478674	738 bp distal
Rr478675	regulatory region 478675	166 bp proximal
Rr478676	regulatory region 478676	1050 bp proximal
Rr478677	regulatory region 478677	1551 bp proximal
Tssr119571	transcription start site region 119571	521 bp downstream
Tssr119572	transcription start site region 119572	1493 bp upstream
Tssr119573	transcription start site region 119573	1509 bp upstream