rs108157136 SNP Detail

Summary

• ID
  rs108157136
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAG TCCATACCGT TAATTATTAG CATCAAGCGG
  TACTTTGAAC TAGAGCCGAG GATGAATTTT TCCGTCCTCA TCACCATGAC TTCATCACCG
  M
  TTCACAGACT GTGTCGCGGG GGTGGGGGTG GGGTGCGCTC ACAGCTTTGC TCGTAATGGG
  TAGAAATGGC ACCATTATTT CACTAAGACT CTCAGAAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146037847	ENSMUSSNP4160749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108157136					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199834 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1896 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1573 bp distal
Rr422701	regulatory region 422701	1829 bp distal
Rr422702	regulatory region 422702	1752 bp proximal
Rr422703	regulatory region 422703	1907 bp proximal
Tssr14852	transcription start site region 14852	152 bp downstream
Tssr14853	transcription start site region 14853	1256 bp downstream