rs108159704 SNP Detail

Summary

• ID
  rs108159704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184267820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAATCC CTGCTGCAAA
  CTTCCCAAAC TTCCTTGCTG TATATGCAGA CTTCCCTAAG GACTGAGTCT TATGGCTCCT
  TTTAGAGTCT ACATGGCCTG CCACCCTGCA CAAGGCTAGG TTGAACCCTG AGTTCTAGAC
  TTCACCTGAA GTCCAGCATG TCTTCAAACA TGTTGAAATG ACCACTCTGC TTATCTCGGA
  Y
  TGGCCCAAGC ATCTTCAATG CAGACCAGTT TCTACCCACC TTTGTCTACC AACATGTAAC
  CAGTGTCCAC TGACTCAGCC ACTGATTCTG CTTCACACTT TCAGGTCTGA TGTAAAACTC
  TTGGGTGAAG CTGAGACATT GCCAATCCCC CGTGAGGGGA TTTTAGCTGG ACTGCTTATT
  CTATGGTTTC ATTTCCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146418850	ENSMUSSNP4233831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs108159704					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184267820 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	54 bp proximal
Rr425238	regulatory region 425238	871 bp proximal
Tssr10585	transcription start site region 10585	1144 bp upstream