rs108160080 SNP Detail

Summary

• ID
  rs108160080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80039026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCACCCA GAGGCTGCTA
  GGCCCATATG TGTCCAGCCC CGAGGTATCT TTGCACACTC ACACGCACTC TGTGCTCATG
  TGTGTCGTGG GAGTTGAGGT GTGCCTACAA ACTCCTTGGG CACTGCCCTC TCTCCTCTCT
  GAGCCACTCT ACCAACATTG GACTGTCACG GCAGCTTCTT TAACAGAAGC AGTTCGGTGT
  R
  GTTAGGACAG GTCACGTGCT CGTCACGAGT GGAGTCTGTC CCTCCACCCT TGCACACCTG
  CCCTGAGCTG CTGTCCTGCC TTGTAACAAA GGCTAGGAAT CCAGCAGATG CCTGTGTCAG
  CATCTGCCTG AGCTGCCCCA AGAGAATAGC TTAGCATGTT CCCAGACGTC CCTCCTCAGT
  CTCATGTCAA GAGTGTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148214228	ENSMUSSNP1881951	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108160080					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80039026 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1426 bp distal
Rr308003	regulatory region 308003	1775 bp proximal
Rr310675	regulatory region 310675	1392 bp proximal
Rr314587	regulatory region 314587	626 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates