rs108161130 SNP Detail

Summary

• ID
  rs108161130
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108539595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTGGTGTTT GTGGGGCACC CCCTGGACAC GGTCAAGGTG
  CGCGGAGTGT GGACGGGGGC TTGTGGAGGA ATGCCCCGGG GCGGTGTGTG TGTGTGTGGG
  K
  GGGGGGGGGG GGGTTACGTG GAAAGTAGGG ACCGCCGCGA GGTGCTGCCT TTCTGAACAG
  AAGTGGAGCC GGGCTGATGG ATGCTTCCTT CCGTGGGAAG T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136952717	ENSMUSSNP2082600	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108161130					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108539595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	24 bp distal
Rr401686	regulatory region 401686	209 bp downstream
Rr686857	regulatory region 686857	288 bp distal
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	within coordinates
Tssr87151	transcription start site region 87151	303 bp downstream
Tssr87152	transcription start site region 87152	177 bp downstream