rs108166120 SNP Detail

Summary

• ID
  rs108166120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85265555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGGTGC CCTTGGGGGG
  CGGAGCCCGA GGAGGGGCGG GGAAAGACGG CGGTGCGGGG AGGGGAGGGG GGTTGCAGAA
  GGAGCGGAGC GGCCGCTGCT CAATGGCGGA AAAGCCGCTG GTGCTCTGAC CGCCTGGTCC
  CCCCTGGCAG TTGCGGGGGA GTTTCCTGCC GGCGCGGCTG GAGTCTCTGT TTCTCCGTGT
  Y
  CGGTGGCTGG AAGATGCTCC AGAGAGATCA GGCTGCGGCG GAGGAGGTGG CGGCGGCCGA
  GTCGGCAGCG GCTCTGGGTT GGAGAGAAGG CGGCGGCGGC GGTGTGAGGG GCCGGACGGT
  GTAAACAGCT CGGGCGGCGG CGGTGGCCGA GCCCCCGAGG GCGAAGCGGC GGCGGAGGCG
  GTGTCGCGTC TCGGGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399301565	MGP_WTSI_17_85357467	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108166120					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399301565	MGP_WTSI_17_85357467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85265555 () rs orientation: forward

Symbol	Name	Function Class
1110020A21Rik	RIKEN cDNA 1110020A21 gene	417 bp upstream
Cpgi9575	CpG island 9575	790 bp distal
Cpgi9576	CpG island 9576	within coordinates
Gm65249	predicted gene, 65249	1835 bp downstream
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	within coordinates
Rr393051	regulatory region 393051	1610 bp upstream
Rr405500	regulatory region 405500	431 bp downstream
Rr532186	regulatory region 532186	1376 bp distal
Rr532187	regulatory region 532187	715 bp distal
Rr532188	regulatory region 532188	within coordinates
Rr532189	regulatory region 532189	260 bp proximal
Rr532190	regulatory region 532190	1953 bp proximal
Tssr5218	transcription start site region 5218	1182 bp upstream
Tssr146069	transcription start site region 146069	1382 bp downstream
Tssr146070	transcription start site region 146070	989 bp downstream
Tssr146071	transcription start site region 146071	109 bp downstream
Tssr149699	transcription start site region 149699	360 bp downstream
Tssr149700	transcription start site region 149700	379 bp downstream
Tssr149701	transcription start site region 149701	409 bp downstream