rs108166426 SNP Detail

Summary

• ID
  rs108166426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAGCCC AGGGATCTTG
  TGGTAGTAGT TTTTTAAACC TCAACTAGTC TGCCATGATC GGACCATAAA GGAAGGACTT
  AAACTTGGGG TTAGTGGAGA GTGAGCACGA TATTTTCTGA TGGATCCAGG GATGACCTAC
  TCCCCTGTTG AGGGCCTTGT GTCTGTCTTC ATCCTTTGGT TGCAGCTTGG AGGGTGAGGG
  R
  AGAACTGAGC TTGGATCTCC CCATTTCTCT CTGCAGTCAC ACAGCCTGAG TTCAACTCCT
  GATCCATCCA TCACTTAACA GGCCTGTGAT CTCGCTCAAG CGACTGGCTT CCGTGAGCTT
  CAGTTTCCCC GCGTGTGAAA GAGAAGGGGA TTTGAGCGTT GGGACCCAGA GTCTCTTTAT
  CTCTGTGCTC AGACGCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144663632	ENSMUSSNP764475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108166426					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887574 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	Intron
Tssr7321	transcription start site region 7321	664 bp upstream
Tssr7322	transcription start site region 7322	693 bp upstream
Tssr7323	transcription start site region 7323	736 bp upstream
Tssr7324	transcription start site region 7324	785 bp upstream
Tssr7325	transcription start site region 7325	800 bp upstream
Tssr7326	transcription start site region 7326	830 bp upstream
Tssr7327	transcription start site region 7327	859 bp upstream
Tssr7328	transcription start site region 7328	1162 bp upstream
Tssr7329	transcription start site region 7329	1197 bp upstream
Tssr7330	transcription start site region 7330	1211 bp upstream
Tssr12178	transcription start site region 12178	700 bp downstream
Tssr12179	transcription start site region 12179	743 bp downstream
Tssr12180	transcription start site region 12180	807 bp downstream
Tssr12181	transcription start site region 12181	828 bp downstream
Tssr12182	transcription start site region 12182	871 bp downstream
Tssr12183	transcription start site region 12183	892 bp downstream