rs108166969 SNP Detail

Summary

• ID
  rs108166969
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20971978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTCTCAGAGA GTACTTCAAC CCACACCTGA CTGATCACAG
  ACACAACTGG GCCAATAAAT CATCTGAATT AGGACATTTT CGTCTATAGC TCATTCAGAA
  W
  TTCTCAACTG TATTTTAAAA ACCCAGAGGT TCTGAAGACA CTAGTCAAAA ATCACACCAT
  CTAACTCCCC GAGGCAAGAG GCATGGTTAC TGCTGCTGCC A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137286989	ENSMUSSNP5524245	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108166969					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20971978 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	715 bp upstream
Cpgi4472	CpG island 4472	453 bp distal
Rr463638	regulatory region 463638	933 bp distal
Rr463639	regulatory region 463639	225 bp distal
Rr463640	regulatory region 463640	487 bp distal
Rr463641	regulatory region 463641	440 bp distal
Tssr115849	transcription start site region 115849	894 bp upstream
Tssr115850	transcription start site region 115850	741 bp upstream
Tssr115851	transcription start site region 115851	704 bp upstream