rs108168246 SNP Detail

Summary

• ID
  rs108168246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57525365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTGAG ACAGGGTCTT
  ATTAAGTTAC CCCTGCTATT CTCAAATTCA TGATCCTCCT GCCCCACACC TCCCAAGTGC
  TGGGATCCCA GGGCACACCT TATACCTGGC TTACAAAGTG CTGGAGAGGG AGCCTGGAAC
  TTTGCATGAA CTAATTGAGC ACTCTCTTCT GAAGCCTAGC CAGTTCTAAG TTTCTGTAAC
  R
  TCTGGGCCCT AAGACAATCC TTGCTGTCTC AGAGCCCAGG TCAACAGCAG GGAGATCTGA
  AGGCTAGAGG CAGCAGATGC CCCGAGGACT CACCACGACC TTCAGTGTCT TCTTGACACC
  ATCACTGATG AAGTGATTGA AGACAGCAGC CTTGACCTCC ACCTCTTGTT GGCCGATCTT
  CAAGGGGACA ATGACATACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130940586	NCBIM37_NT_039649_chr17_57357788	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108168246					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130940586	NCBIM37_NT_039649_chr17_57357788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57525365 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Mir6978	microRNA 6978	1137 bp upstream
Rr405394	regulatory region 405394	819 bp upstream
Rr529295	regulatory region 529295	972 bp proximal
Tssr148927	transcription start site region 148927	1195 bp upstream
Tssr148928	transcription start site region 148928	466 bp upstream
Tssr148929	transcription start site region 148929	221 bp upstream
Tssr148930	transcription start site region 148930	168 bp upstream
Tssr148931	transcription start site region 148931	141 bp downstream
Tssr148932	transcription start site region 148932	291 bp downstream
Tssr148933	transcription start site region 148933	507 bp downstream
Tssr148934	transcription start site region 148934	1815 bp downstream