rs108168846 SNP Detail

Summary

• ID
  rs108168846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCACCA CCTCCTTACA
  CACCAGGCAT GCATTTGGTG CACAGATATG CATGCACACA ATAATAAAAA TAAATCTAAA
  ATTTAAACCT TTTGTTATTG GTGGGGAGTG GGGGGGGGGC TACCATAGTG CACAGGTGGG
  GGTCAGGGGA CAACTTTGAA GGGTCTGTTC TCTCCTTCCA CTGTGGCTCT TGGACCTAAA
  Y
  TCAAGCGGTC AGGCTTGTAT GGCAAGTGTT CTGACTCACT GAACCATCTT ACGGCTGCTG
  TTGTTGTTGT TGTTTTTTTT GGTTTTTTGT TTTGTTTGTT TTGTTTTTGA GACAGGCTGT
  TTCTGTGTAA CAGAGCCCTG GCTATCCTAG ACTCACTTCA TAGACCCAGG ACGGCTTTGA
  ATTCACAGAG ATCCACCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145879521	ENSMUSSNP1753616	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T		T
ss322451438	CHEV_7_134476542	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108168846					SNP	T	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932200 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	Intron
Tssr69200	transcription start site region 69200	666 bp downstream
Tssr69201	transcription start site region 69201	542 bp upstream
Tssr69202	transcription start site region 69202	574 bp upstream
Tssr69203	transcription start site region 69203	622 bp upstream
Tssr69204	transcription start site region 69204	753 bp upstream
Tssr69205	transcription start site region 69205	1685 bp upstream