rs108170653 SNP Detail

Summary

• ID
  rs108170653
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAATGAGCTG AACCGTCTGC GGAACCTGGC TCGCGCGCAC
  AAGATGCAGA TGCCCAGCTC AGCCGGCCTG CACCCTACTG GACACCAGAG TAAGGAAGAG
  C
  TGGGCCGCGC CATGCAAGTG GCCAAGGTTT CCACCGCTTC GGTGGGACGC TTCCAGGAGC
  GCCTTCCCAA GGAGAAAGCT CCCCGGGGCT CCGGCAAGAA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148565719	ENSMUSSNP143118	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108170653					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616400 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1773 bp upstream
Cpgi23	CpG island 23	within coordinates
Rr395961	regulatory region 395961	779 bp downstream
Rr407596	regulatory region 407596	977 bp distal
Rr407597	regulatory region 407597	757 bp distal
Rr407598	regulatory region 407598	821 bp distal
Rr407599	regulatory region 407599	593 bp distal
Rr407600	regulatory region 407600	within coordinates
Rr407601	regulatory region 407601	15 bp distal
Rr407602	regulatory region 407602	1346 bp proximal
Rr407603	regulatory region 407603	1784 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-NonSynonymous
Tssr5894	transcription start site region 5894	787 bp downstream
Tssr5895	transcription start site region 5895	696 bp downstream
Tssr5896	transcription start site region 5896	680 bp downstream
Tssr5897	transcription start site region 5897	187 bp downstream
Tssr5898	transcription start site region 5898	1874 bp upstream
Tssr5899	transcription start site region 5899	1939 bp upstream