rs108171745 SNP Detail

Summary

• ID
  rs108171745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8798169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGAAGAGC ATGACAACGG CAAGGGGGAG GAAGACGGGC
  CGGAGGAACG GAGCGGAGAC GAGACTCCGG GATCCGAGGC ACCGGGTGAC AAGGCCGTAG
  R
  GGAACAAGGT GAGGAACTGG CAGCCAAGCC GGGCTTCAAC CTGCCGGGTG CGTCTCCGAT
  CCAGCACCCC ACCCTGCACC GCGCTATCTG ATTCCTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146030654	ENSMUSSNP1468574	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108171745					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8798169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	within coordinates
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	within coordinates
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	270 bp downstream
Tssr154829	transcription start site region 154829	1231 bp downstream
Tssr154830	transcription start site region 154830	1197 bp downstream
Tssr154831	transcription start site region 154831	771 bp downstream
Tssr154832	transcription start site region 154832	745 bp downstream
Tssr154833	transcription start site region 154833	729 bp downstream
Tssr154834	transcription start site region 154834	666 bp downstream
Tssr154835	transcription start site region 154835	556 bp downstream
Tssr154836	transcription start site region 154836	491 bp downstream
Tssr154837	transcription start site region 154837	124 bp downstream
Tssr154838	transcription start site region 154838	101 bp downstream
Tssr158064	transcription start site region 158064	1797 bp upstream
Tssr158065	transcription start site region 158065	1614 bp upstream
Tssr158066	transcription start site region 158066	1554 bp upstream
Tssr158067	transcription start site region 158067	1504 bp upstream
Tssr158068	transcription start site region 158068	1455 bp upstream
Tssr158069	transcription start site region 158069	1015 bp upstream
Tssr158070	transcription start site region 158070	505 bp downstream
Ttc9c	tetratricopeptide repeat domain 9C	1472 bp upstream