rs108172298 SNP Detail

Summary

• ID
  rs108172298
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55148415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AGGCTATTTT TCATGAGGAC
  A
  AGCTGATTGG ATTAATGTGG TCAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139573001	ENSMUSSNP906108	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324640817	CHEV_14_55529795	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108172298					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55148415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	1001 bp proximal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	within coordinates
Tssr128658	transcription start site region 128658	1359 bp downstream
Tssr128659	transcription start site region 128659	1485 bp downstream