rs108173103 SNP Detail

Summary

• ID
  rs108173103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35723172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGAAGC TTGCCTTCCA
  GGGCTCGTGA TGATTTGTGG CGGGTGGCGT TCCTTCTCTC TTGTTTTTCT TGTGCTTTCC
  ACAGTGTGGG GCCCAGCAGT AAGAATCTGG GAATCTTGCC TCTGAGTTCT GTTTTCTTGG
  ACCAGTCTGA CAAGTGATGG AAGTGCTTAG GGACCAGACC CGGCTGAATG AATGACTTCT
  R
  TAAACTGTCC AGATCCTGCA TTGGTGAGAG GACCAGGAGG TGAAGCCAAA CCACACAGTC
  TACCACTGTC TCCTGCACCC TCATCTCTGC CACTTATCAG AGAAAACATA GAGCAGACAC
  TATCTCTTTG AAGGGGTTTG AGTCCTAGAA AATATGAGCT AAATTTTAAG TACAATTTTA
  ATTTTAATGA AAGCTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146415502	ENSMUSSNP2582830	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108173103					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35723172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			1559 bp downstream
Rr555792	regulatory region 555792			1287 bp distal
Rr555793	regulatory region 555793			8 bp distal
Rr555794	regulatory region 555794			983 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant