rs108174744 SNP Detail

Summary

• ID
  rs108174744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5085845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC AGGGTTGTTT GCTTCTCTCT
  Y
  TCTTTCTTTC TTTCTTTCTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148184636	ENSMUSSNP1170816	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322095917	CHEV_7_5034448	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs108174744					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5085845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	1832 bp distal
Epn1	epsin 1	within coordinates
Rr167875	regulatory region 167875	244 bp distal
Tssr64422	transcription start site region 64422	918 bp downstream
Tssr64423	transcription start site region 64423	857 bp upstream
Tssr64424	transcription start site region 64424	1076 bp upstream