rs108175940 SNP Detail

Summary

• ID
  rs108175940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992438 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TACCGGTACA TTCCAATTCT TCTACCTAGC CTTTGTTTTT
  TGCAAAGGAA TGTTTTTTGG ATGTGCCTTA TGCACGACAA ACTCCTCAAG AGCCACGGGT
  R
  TATAAGAGTA CTAGTTTTCA TTTAAATTAT ACATTATGCT TTGTGCATAA TGTGGATAAA
  CCTTTTACAC CCTGTATATT TTTTAAGAAA AAGATTATCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146766978	ENSMUSSNP1368980	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss147466904	ENSMUSSNP223502	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss148191923	ENSMUSSNP941133	ENSEMBL	ENSEMBL_Sanger	r	SNP		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108175940					SNP	?	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992438 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates