rs108178557 SNP Detail

Summary

• ID
  rs108178557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47819653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAAACC AGCGTCCAGA
  GAGAGTTCAC ATAGTCAGAC AGCCATGGCT ATGTAGAGAG ACCCTATACA CCAGAAAAGC
  ACAGGCTGTT TTTTCAGATG ACCCAGGTTC AATTCCCAGC AACTCACAGT TGTCCATTTG
  TCACTGCAGT TCAGGGGATT TGATGCCCTT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC
  Y
  TTCCTTTCTT TCTTAAATAT ATATATTTTA AAGATCTATT TATTGTTATA TGTAAGTACA
  CTGTAGCTAT CTCCAGTCAC ACCAGAAAAG GGCATTAGCT CTCATTATAG ATGGTTGTGA
  GCCACCATGT GGTTGCTGGG ATTTGAACTC AGGACCTTCA GAAGAGGAGT CAGTGCTCTT
  AACCACTGAG CCTTCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss130871812	NCBIM37_NT_039649_chr17_47645677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108178557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130871812	NCBIM37_NT_039649_chr17_47645677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47819653 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr370267	regulatory region 370267	463 bp downstream
Rr528025	regulatory region 528025	26 bp distal
Rr528026	regulatory region 528026	360 bp proximal
Rr528027	regulatory region 528027	1872 bp proximal
Tssr5140	transcription start site region 5140	748 bp upstream
Tssr144927	transcription start site region 144927	422 bp downstream
Tssr144928	transcription start site region 144928	465 bp upstream
Tssr144929	transcription start site region 144929	614 bp upstream
Tssr144930	transcription start site region 144930	692 bp upstream
Tssr144931	transcription start site region 144931	720 bp upstream
Tssr144932	transcription start site region 144932	789 bp upstream
Tssr144933	transcription start site region 144933	835 bp upstream
Tssr144934	transcription start site region 144934	901 bp upstream
Tssr144935	transcription start site region 144935	1901 bp upstream
Tssr148442	transcription start site region 148442	722 bp upstream
Tssr148443	transcription start site region 148443	772 bp downstream