rs108179127 SNP Detail

Summary

• ID
  rs108179127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTCATT GGACCCTTTT
  CCCTCTGCCA GTGTTGGGGA CATTGTGGAA TGAGATCAGA GTTTCTAGCT ACAGAGACTT
  GAGATGGGAA GTGTCTCTGA TCATTCCGTC ACGGCATCAG TCTGTGCTCA ATCCTTGAAC
  CCGTGGTCAT GGCTCCCACG GTTGTGTTTC TATTGCTCAA GGACTTGGGG TCCTAGCAGA
  R
  AGTTACACAG CACCGTTGAG TGTAAGTGGG TTAGACGTAG CGTTTCACTG TCTGTCTTTA
  ATAGCTGTAT TAGATCATCT AGTAGGAGCT CGATTTTACA GATGAGGAAA CTTGGGCACA
  GGAGGTAAAG AGATCTCTAT AAAGAGGGAA CAAGAAAGGA GTGTCAGGGA ATTAGAGAGA
  TGGCTCAACA GTTAAGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348107	MGP_WTSI_17_47643485	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108179127					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348107	MGP_WTSI_17_47643485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817461 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	1191 bp distal
Rr370265	regulatory region 370265	1855 bp downstream
Rr370266	regulatory region 370266	1388 bp downstream
Rr370267	regulatory region 370267	1428 bp upstream
Rr528023	regulatory region 528023	1377 bp distal
Rr528024	regulatory region 528024	635 bp distal
Rr528025	regulatory region 528025	486 bp proximal
Tssr144917	transcription start site region 144917	1692 bp downstream
Tssr144918	transcription start site region 144918	1576 bp downstream
Tssr144919	transcription start site region 144919	1470 bp downstream
Tssr144920	transcription start site region 144920	1452 bp downstream
Tssr144921	transcription start site region 144921	1431 bp downstream
Tssr144922	transcription start site region 144922	1404 bp downstream
Tssr144923	transcription start site region 144923	1372 bp downstream
Tssr144924	transcription start site region 144924	1354 bp downstream
Tssr144925	transcription start site region 144925	1331 bp downstream
Tssr144926	transcription start site region 144926	1308 bp downstream
Tssr144927	transcription start site region 144927	1751 bp upstream
Tssr148442	transcription start site region 148442	1450 bp downstream