rs108181408 SNP Detail

Summary

• ID
  rs108181408
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52003120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATTAGA ATTGTTAGAG
  TAAGATGTAC CTGTAATACA GTGACTTAGG CAGGATTAAT GATTTAGGGG TGGGAGATGT
  GTTGACTGAA ACAGGACCTC ATTACATTCC TAGGCTGGTC TTGAACTTTC AGTCCTCCTG
  CCTCAGCTTT CTGGGTGGTG GGATCTCAGA AGTGTCCCAC CATGCCCAAC TTCTTGCTTG
  T
  TTTTTTTTGT TTTTGTTTTT GTTTGTTTTT TTTTTTAAGA GTCTTAAGTA TGCAGTCAGT
  ACTGGTATAG GCCTTCCCAG ACATTCTCTG GCTCTTTGGT TCTTTCATAA TACCAGCTTT
  CAGTCTCACT CTCCAAGGCG ATCCATATTC TGAGTGAGAA GGTGGAAGAA TGCCAAGGAA
  GAGGGACCGC AAACATTCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133190232	ENSMUSSNP6224813	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108181408					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52003120 () rs orientation: forward

Symbol	Name	Function Class
Gm44077	predicted gene, 44077	within coordinates
Rr379355	regulatory region 379355	within coordinates
Rr630311	regulatory region 630311	35 bp proximal
Rr630312	regulatory region 630312	1208 bp proximal
Tssr56493	transcription start site region 56493	479 bp upstream