rs108182552 SNP Detail

Summary

• ID
  rs108182552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164712602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGGTT GTATAAGAAA
  GCAAGCTGTG GCTGGAGAGA TGATTCAGGC ACTGAGGGTC TTTGCTGCTC CCTTCAGTAG
  CTTCCCTTTT CTCTCAGGTC CCATTCTGTC AGCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCCCTCT CTCTCTCTCT CACATTCGTC ACTTTGTCTC
  Y
  CACTCAGTTA GACATCACTT TCAAACATGG GTTCTTCGGT CTACAAACTA ACTTTACCTT
  CCTGTTTGGG ATTAAAGGTG TATACCACCA TGCCTGGACC TTCGCTTTTC TTTACCTGAA
  ACTTGCTCTA CACCAGGCTG GCCTTGAACT CAGAGATCTG CTTGCCTCTG TCTCCAAGGA
  TAAAAGGCAT GCCTGTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148232506	ENSMUSSNP6842583	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108182552					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164712602 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1098 bp distal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	1106 bp distal
Gm75526	predicted gene, 75526	within coordinates
Rr40389	regulatory region 40389	999 bp proximal
Rr47627	regulatory region 47627	602 bp distal