rs108182625 SNP Detail

Summary

• ID
  rs108182625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29301688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCCAGG CCCCCATGGA
  TGAGAAAGCT GGAGGATGGA AAGGGCCTGG ACCCCTGAAT CACCCCACTC AGGGGTCCCC
  CGCCACCTAG AACACCTTCC CTGGATTCAG GAGTGTGGGA AATAATTTCC CTTCCCCTCA
  AAGTGTTTTT ATTTATTTAC TTATTTATTT TTGTTGGTGT TTCAAGACAG GGTTTCTCTG
  W
  GTAGCCCTGG CTGTCTTGGA ACTCACTCTG TAGACCAGGC TGGCCTCGAA CTCAGAAACC
  CTCCTGCCTC TGCCTCCCAA GTTCTGGGAC CAAAGGCAGG TGCCACCACT GCCTGGTTCA
  AAGTATTATC TTTTTTCTTT CTCTTTGGTT TTTCGAAACA GGGTTTCTCT GTGTAGCCTT
  GGCTGTCCTG GAACTCACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145426482	ENSMUSSNP2964868	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108182625					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29301688 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	531 bp downstream
Rr524789	regulatory region 524789	180 bp distal
Rr524790	regulatory region 524790	1553 bp proximal
Tssr143493	transcription start site region 143493	1127 bp downstream
Tssr147178	transcription start site region 147178	1858 bp upstream