rs108183770 SNP Detail

Summary

• ID
  rs108183770
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTAGT TGGACTTAAT
  ACATGAAGAA TTAAATCATG GCTGAGCATT TGATATTGTA GGACACAGAT TATCTTTAAT
  ATTTTCCCAA ATTGATCTAT GTTTTGATTT TTGTAATCAC TAGTTCTGAC ACTTCCACTT
  TTCATAAATA AATAGTTCAA AATGGCAGAA GTACAGTGAG GGCCATTTTG GAAATTTCTG
  K
  AAATCCTGTT CTAGTCTCAG GCCAAATATT CTTCCTTTAA TACCTTTTAA TAATATAACT
  GAAATCAGCA GCTCAGGCAA CAACTTTAAA AGTCAAAATT CTAACATAAT ACTGACTAAC
  AATGTACTAA CTTGATACTC ACATGCTGAA AACAGTAAAA AAAAAAATAC TAAATTGCGT
  TTGAAAATGA ACAGGGAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245686	ENSMUSSNP3306276	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108183770					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876554 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1209 bp downstream
Rr562815	regulatory region 562815	363 bp distal
Rr562816	regulatory region 562816	132 bp proximal
Tssr600	transcription start site region 600	1489 bp downstream
Tssr601	transcription start site region 601	1499 bp downstream
Tssr19429	transcription start site region 19429	1211 bp upstream
Tssr19430	transcription start site region 19430	1306 bp upstream
Tssr19431	transcription start site region 19431	1386 bp upstream
Tssr19432	transcription start site region 19432	1482 bp upstream
Tssr25660	transcription start site region 25660	1238 bp downstream
Tssr25661	transcription start site region 25661	1255 bp downstream
Tssr25662	transcription start site region 25662	1312 bp downstream
Tssr25663	transcription start site region 25663	1375 bp downstream
Tssr25664	transcription start site region 25664	1405 bp downstream
Tssr25665	transcription start site region 25665	1513 bp downstream