rs108184972 SNP Detail

Summary

• ID
  rs108184972
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79661289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCAGAGGCA GGCAGATCTC TGAGTTCGAG GCCAGCCTGG
  TCTACAGAAT GAGTTCCAGG ACAGCCAGGG CTACACAGAG AAACCCTGTC TCGAAAAACC
  C
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AACCAAAAAA AAAAACAGAA GTTTGTTGTG
  TGATCTGCAG TCAGGTATAG TTGGATCCAG GAGCTTTGAT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147178864	ENSMUSSNP4794536	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108184972					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79661289 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	512 bp proximal
Rr225117	regulatory region 225117	888 bp distal
Rr228949	regulatory region 228949	1312 bp proximal
Tssr94404	transcription start site region 94404	837 bp downstream
Tssr94405	transcription start site region 94405	760 bp downstream
Tssr94406	transcription start site region 94406	735 bp downstream
Tssr94407	transcription start site region 94407	551 bp upstream
Tssr94408	transcription start site region 94408	663 bp upstream
Tssr94409	transcription start site region 94409	859 bp upstream