rs108186065 SNP Detail

Summary

• ID
  rs108186065
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATAAGAGTCA GACAAGAAAA AGAGATAAAG AAACATGAGG
  CTGACAAAGA CAGAAACCAG AGTCAGAATC AGAGCTGTGC TGTGAGACAG AAAGATAAGA
  A
  AAATAAAATG CTGGTCACAA AAGTCAGAAA AATTAGAAAA CTTAGATAGT ACCTGGCAAC
  AAACGAAAGC TTTTGGCTAA AGATCAATGT GTTTACTGTA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145288320	ENSMUSSNP6518563	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108186065					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695840 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	580 bp downstream
Rr522959	regulatory region 522959	1417 bp distal
Rr522960	regulatory region 522960	1874 bp distal
Rr522961	regulatory region 522961	821 bp distal
Rr522962	regulatory region 522962	523 bp distal
Rr522963	regulatory region 522963	556 bp proximal
Tssr142877	transcription start site region 142877	1712 bp downstream
Tssr142878	transcription start site region 142878	1305 bp downstream
Tssr142879	transcription start site region 142879	656 bp downstream