rs108186145 SNP Detail

Summary

• ID
  rs108186145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAAGG TCCAGAGTTC
  AAATCCCAGC AACCACATGG TGGCTCACAA CCATCCGTAA CAAGATCTGA CTCCCTCTTC
  TGGTGTCTGA AGACAGCTAC AGTGTACTTA CATATAATAA TAAATAAATC TTAAAAAAAA
  AAAAAAAAGA ATTTTCCTTA TCAAGTAGCA AAAAAATTTT TTGAGAGTTT TTTTTTTTTT
  K
  TTTTTTGTTT TTTTTTTAGC CTGGTTTAAA CAGTGAGTTC CAAGACAGCT GGGGCTACAA
  AGAGAGACTC TGTTTCAAAA AAATTTTTTT TCAAAATTTA ATTTCATGTG TCGTGCCTGA
  ATATGTGCAT CATGTGCATA CCTTGTGTCT GCAGACCCCA GAGAGGGTGC TGGGCACCAA
  ATTTGGGTCC TCTGTAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SWR/J	ZALENDE/EiJ
ss398327279	MGP_WTSI_17_46864748	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	T	G	G	T	G	T	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SWR/J	ZALENDE/EiJ
rs108186145					SNP	G	G	G	G	G	G	T	G	G	T	G	T	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398327279	MGP_WTSI_17_46864748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	904 bp proximal
Cpgi9243	CpG island 9243	1949 bp proximal
Gm65860	predicted gene, 65860	1248 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Rr331605	regulatory region 331605	1925 bp distal
Rr331606	regulatory region 331606	125 bp distal
Rr331607	regulatory region 331607	276 bp proximal
Rr339923	regulatory region 339923	475 bp proximal
Tssr148377	transcription start site region 148377	1476 bp upstream
Tssr148378	transcription start site region 148378	1457 bp upstream
Tssr148379	transcription start site region 148379	1444 bp upstream
Tssr148380	transcription start site region 148380	1081 bp upstream
Tssr148381	transcription start site region 148381	427 bp upstream
Tssr148382	transcription start site region 148382	1359 bp downstream