rs108188744 SNP Detail

Summary

• ID
  rs108188744
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129006850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTAGCTTC TCTCTGGCTA
  GGACGAGCTT AATACAGTGT GCAAGGAATT TGAAAGACGT AGGTTGTGTC TTAATCAACG
  TTAAGTAGAA TGGATAAGCT TTCGGCATTT TGAAAACGCT GGGTTAGGGT TTCTACTCTA
  TTGTGAGTTT TCTGTCTGGG GACTAATAAG CATTACAGAG GACGTGATGT GAGGCGACTT
  W
  TTTTATTCAT GTATAAATCC AGAGTGAACC ACCAAGCAGT TGTTCGACTA AAGTCAAGGT
  AATTTTCTTT TGACGGGTCC ATTTTCTTCT CGATTTCTAA TTTATTAGCC TGCCTTTTCA
  AGACTCTGTC TTCTTTGCAA TTAAAGTAAA GCTTCCTCAG ATTAGCGCGA CATTCACCTG
  ACAGGCGAAT GGGAGGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135885170	ENSMUSSNP5673749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108188744					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129006850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13808	CpG island 13808	336 bp proximal
Gm27195	predicted gene 27195	1406 bp downstream
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584970	regulatory region 584970	369 bp distal
Rr584971	regulatory region 584971	281 bp proximal
Tssr31631	transcription start site region 31631	719 bp upstream
Tssr31632	transcription start site region 31632	749 bp upstream
Tssr31633	transcription start site region 31633	1068 bp upstream