rs108188817 SNP Detail

Summary

• ID
  rs108188817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134684397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA GCATCACTCC AGCCTCTGAA
  K
  ATTTACTTAA TTACATGTAT GTGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144508948	ENSMUSSNP5007304	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321696375	CHEV_5_135131413	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108188817					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134684397 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	496 bp downstream
Rr622117	regulatory region 622117	1128 bp distal
Rr622118	regulatory region 622118	663 bp distal
Tssr53665	transcription start site region 53665	1990 bp downstream