rs108190790 SNP Detail

Summary

• ID
  rs108190790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC ACAGCAACTG ATAAGGACTC
  Y
  CCAGGTGACA GGGAGGACGG GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138725606	ENSMUSSNP4802613	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108190790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			within coordinates
Rr369631	regulatory region 369631			737 bp upstream
Rr473552	regulatory region 473552			1764 bp distal
Rr473553	regulatory region 473553			428 bp distal
Rr473554	regulatory region 473554			272 bp distal
Rr473555	regulatory region 473555			293 bp distal
Rr473556	regulatory region 473556			within coordinates
Rr473557	regulatory region 473557			289 bp proximal
Rr473558	regulatory region 473558			754 bp proximal
Rr473559	regulatory region 473559			945 bp proximal
Rr473560	regulatory region 473560			1191 bp proximal
Tssr115391	transcription start site region 115391			270 bp downstream
Tssr117877	transcription start site region 117877			666 bp upstream
Tssr117878	transcription start site region 117878			607 bp upstream
Tssr117879	transcription start site region 117879			418 bp upstream
Tssr117880	transcription start site region 117880			326 bp upstream
Tssr117881	transcription start site region 117881			308 bp upstream
Tssr117882	transcription start site region 117882			60 bp downstream
Tssr117883	transcription start site region 117883			81 bp downstream
Tssr117884	transcription start site region 117884			133 bp downstream