rs108190790 SNP Detail

Summary

• ID
  rs108190790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC ACAGCAACTG ATAAGGACTC
  Y
  CCAGGTGACA GGGAGGACGG GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138725606	ENSMUSSNP4802613	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108190790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641127 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	737 bp upstream
Tssr115391	transcription start site region 115391	270 bp downstream
Tssr117877	transcription start site region 117877	666 bp upstream
Tssr117878	transcription start site region 117878	607 bp upstream
Tssr117879	transcription start site region 117879	418 bp upstream
Tssr117880	transcription start site region 117880	326 bp upstream
Tssr117881	transcription start site region 117881	308 bp upstream
Tssr117882	transcription start site region 117882	60 bp downstream
Tssr117883	transcription start site region 117883	81 bp downstream
Tssr117884	transcription start site region 117884	133 bp downstream