rs108192044 SNP Detail

Summary

• ID
  rs108192044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180076024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGAGT CCGGACTGTG
  CCACCCACCA TGAGCTTGTC TTCACACCCC AGCTAACAAA ATCAAGATAA TTCTCAAAGG
  CTCATCTCCT AGGCGACTGT AGATTCTGTC AAGTTCACAG TTAACTATCA TAGCTGTGCA
  TTGAAAACGT GGACCTGTAA GCTCCACTCT AGCCTAATGT CTGGGCGACG CATTTTGAGA
  Y
  GGTGCCCTAC GTTCATATAC CCATGGCCTC CCTGGGTTGG GTCAGACTCA GGAAGGCCAG
  GGAACCTCTT ACCCAGTACC TCCCACTCCT ATGACTTGTA GGGATGAAGG GGTAAACTGT
  ACAGCCCTTA ATCCTGGACA CCGGACCTGG TCAGACAGCA ACTAGGAAGA GAGGCGTGCA
  AGCTTCTCAG ACTTGCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378775	ENSMUSSNP6149792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108192044					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180076024 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1103	CpG island 1103			1683 bp proximal
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1409 bp upstream
Rr424423	regulatory region 424423			320 bp distal
Rr424424	regulatory region 424424			51 bp distal
Rr424425	regulatory region 424425			416 bp proximal
Rr424426	regulatory region 424426			1295 bp proximal