rs108194973 SNP Detail

Summary

• ID
  rs108194973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45856967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGCCGGC GCGCCCTCCA
  GCCCCACCAG CGTCTTGGAC ACATCCCGGA CGCCACAGCG CGCATAGTCG AACTCGGCCT
  CCGCCACGTG TGTGTTGACC CGCTCGTGGT AGACCTGCAG GAGGAAGTTG GAGTCGCAAG
  GGGAGCAGAC TGCAGCTTTT GTCTACTCAT CCCAACACAG ACAGAAGTCC TTATAACTGA
  R
  ATCATTTCCT CCACCACCAC CATCATCATT ATCTCCGCCC CCTCCCTCTC CCAGCCCCAG
  TGGGTTTATT AAACCCGTAA GTGGTGATTG CCCTGAAAAC CCTGTACCAC GCACAAACAC
  CTCCTCTAAG AGTCTTGGCC TGAGACCCAG AAACCTGACT TTACATCTAC CTCTGCCAAG
  TAGAAGTACC CTCAGGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403374	CHEV_17_45682990	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108194973					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45856967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9190	CpG island 9190	within coordinates
Cpgi9191	CpG island 9191	763 bp proximal
Rr527420	regulatory region 527420	1742 bp distal
Rr527421	regulatory region 527421	1652 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr5128	transcription start site region 5128	282 bp downstream
Tssr148205	transcription start site region 148205	1660 bp upstream