rs108198774 SNP Detail

Summary

• ID
  rs108198774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47014176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG AACTCCACAG CCCCAGTCCC
  S
  GGCTTAGCTA TCTTGAGTGC ACAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404818	CHEV_17_46840199	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108198774					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47014176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	1308 bp proximal
Gm65134	predicted gene, 65134	1937 bp upstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	within coordinates
Rr339921	regulatory region 339921	within coordinates
Rr370260	regulatory region 370260	1695 bp upstream
Tssr148375	transcription start site region 148375	1652 bp downstream
Tssr148376	transcription start site region 148376	1752 bp downstream