TCCAGGCCAG GGCAGAGGCT TGTGTTTGAA CTCCTGCTCA CTCTCTTTTG GCCGGGACCT TCAGAGTCCT GTGCCTTCTC GAAGCATCAG CATCTGTGTA AAGAATCCTA AGGTGCCATG GGCACAGAGC AGAGCTTCCT GTTGGGAAGC CATGGAAGCA AGCTGGATGC AGAGCTTAGC AAGGAACCCG GGGGCGGGGG S GGGGGGGGGG CAGAAGGGTG AGATGAATCT GGAGTAATGA CAGTCTTAGC TCTTCCTTGA GACTCTAGCA GGCTCAGCAC TGCAGCAGCT GCAGAAGAGA AAGCAAATGG TTGTGAAGAC CCAGTGTAGG AACTGTCCAA AGCCATGGGG CAGAGAGGCC AGGCATCCAT AAGGTCGCTT GCTAGGGAAG GTGTCACAGC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
AKR/J |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57L/J |
CAST/EiJ |
CBA/J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
LP/J |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RF/J |
SEA/GnJ |
SJL/J |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss397934084 | MGP_WTSI_17_28139227 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | C | G | C | C | C | G | G | G | G | G | G | G | C | C | C | C | C | G | G | G | G | G | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
AKR/J |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57L/J |
CAST/EiJ |
CBA/J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
LP/J |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RF/J |
SEA/GnJ |
SJL/J |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs108199209 | SNP | G | G | G | G | G | C | G | C | C | C | G | G | G | G | G | G | G | C | C | C | C | C | G | G | G | G | G | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss397934084 | MGP_WTSI_17_28139227 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/G |
Location: Chr17:28221256 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Anks1 | ankyrin repeat and SAM domain containing 1 | within coordinates | ||||||
Gm35290 | predicted gene, 35290 | within coordinates | ||||||
Rr340975 | regulatory region 340975 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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