rs108199209 SNP Detail

Summary

• ID
  rs108199209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28221256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGCCAG GGCAGAGGCT
  TGTGTTTGAA CTCCTGCTCA CTCTCTTTTG GCCGGGACCT TCAGAGTCCT GTGCCTTCTC
  GAAGCATCAG CATCTGTGTA AAGAATCCTA AGGTGCCATG GGCACAGAGC AGAGCTTCCT
  GTTGGGAAGC CATGGAAGCA AGCTGGATGC AGAGCTTAGC AAGGAACCCG GGGGCGGGGG
  S
  GGGGGGGGGG CAGAAGGGTG AGATGAATCT GGAGTAATGA CAGTCTTAGC TCTTCCTTGA
  GACTCTAGCA GGCTCAGCAC TGCAGCAGCT GCAGAAGAGA AAGCAAATGG TTGTGAAGAC
  CCAGTGTAGG AACTGTCCAA AGCCATGGGG CAGAGAGGCC AGGCATCCAT AAGGTCGCTT
  GCTAGGGAAG GTGTCACAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss397934084	MGP_WTSI_17_28139227	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	G	C	C	C	G	G	G	G	G	G	G	C	C	C	C	C	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs108199209					SNP	G	G	G	G	G	C	G	C	C	C	G	G	G	G	G	G	G	C	C	C	C	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397934084	MGP_WTSI_17_28139227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28221256 () rs orientation: forward

Symbol	Name	Function Class
Anks1	ankyrin repeat and SAM domain containing 1	within coordinates
Gm35290	predicted gene, 35290	within coordinates
Rr340975	regulatory region 340975	within coordinates