rs108201572 SNP Detail

Summary

• ID
  rs108201572
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGGCAA CACCAGGGGA AGTTAAGAGT GGCAGACGGG
  GTAACGGGGA CAGAAGGGAG ACCAGTTATC CCTCCCTACC CCTAAGTTAT TCCTTGGGAA
  W
  AACTTAGGTC AGTTAAATTC CAGAGCTATG GACCTCTGGG CTTCAAGAAC CCTGCACTTA
  ACCTTCATCC CAACACTGTA CCAGGAAACA CTGAAGATAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120009167	PARCsnp_1.18662	PARC_SEQ	INBRED	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108201572					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	354 bp proximal
Gm36937	predicted gene, 36937	1529 bp downstream
Gm70847	predicted gene, 70847	1090 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	264 bp distal
Rr423526	regulatory region 423526	74 bp distal
Rr423527	regulatory region 423527	600 bp proximal
Rr423528	regulatory region 423528	707 bp proximal
Rr423529	regulatory region 423529	1122 bp proximal
Rr423530	regulatory region 423530	1649 bp proximal
Tssr15210	transcription start site region 15210	1028 bp downstream
Tssr15211	transcription start site region 15211	1038 bp downstream
Tssr15212	transcription start site region 15212	1058 bp downstream