rs108204455 SNP Detail

Summary

• ID
  rs108204455
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90577536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GTGCTTCTAA GGCTGGGCCA CATAACTTGT TTATCTATTT
  TTTGAGAGTG TCTCAAGTGA ACCCAAACTT TTTTTGGGGG GGGGGGGCAG TTCGAGACAG
  G
  GTTTCTGTGT ATATCCCTGA CTGTCCTGGA ACTTTGTAGA CCAGGCCGGC CTTGAACTCA
  GAAATTCGCT TGCCTCTGCC TCCCAAGTGC TGGGATTAAA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146921112	ENSMUSSNP2130325	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108204455					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90577536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11884	CpG island 11884			984 bp distal
Fnbp4	formin binding protein 4			Intron
				Noncoding-Transcript-Variant
Gm75673	predicted gene, 75673			1364 bp upstream
Rpl30-ps3	ribosomal protein L30, pseudogene 3			424 bp downstream
Rr367222	regulatory region 367222			1665 bp downstream
Rr560566	regulatory region 560566			1996 bp distal
Rr560567	regulatory region 560567			1812 bp distal
Rr560568	regulatory region 560568			874 bp distal
Tssr18764	transcription start site region 18764			1723 bp downstream
Tssr18765	transcription start site region 18765			1677 bp downstream
Tssr18766	transcription start site region 18766			1589 bp downstream
Tssr25135	transcription start site region 25135			1943 bp upstream
Tssr25136	transcription start site region 25136			1904 bp upstream