rs108209632 SNP Detail

Summary

• ID
  rs108209632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:103830039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAAGTCCA TCGAGTGGGC ACTGAGGTAC CACCCACACT
  GTTCGGGACA GAGCTCAGCT CTCTCTGCGC CTAAACCAAA GGAGTCCTAA GCAAAGCAGT
  Y
  AGAACACCCA TCCCTCATAA ACACAACAAA CACAACATCC TGTGTCCAAA GTGCGTCTGG
  TGTCCTGAGT CACATTGCCT CTAGGAAGAC ACAACATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138011872	ENSMUSSNP2578999	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108209632					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:103830039 () rs orientation: forward

Symbol	Name	Function Class
Rr471835	regulatory region 471835	240 bp distal
Rr471836	regulatory region 471836	within coordinates
Serpina1a	serine (or cysteine) peptidase inhibitor, clade A, member 1A	218 bp upstream
Tssr117529	transcription start site region 117529	481 bp upstream
Tssr117530	transcription start site region 117530	150 bp upstream
Tssr117531	transcription start site region 117531	1892 bp downstream
Tssr117532	transcription start site region 117532	1946 bp downstream
Tssr117533	transcription start site region 117533	1978 bp downstream
Tssr117534	transcription start site region 117534	1994 bp downstream