rs108210669 SNP Detail

Summary

• ID
  rs108210669
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:97724564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGGGGC AGAGGCAGGC
  AAATCTCGAG TTTGAGGCCA GCCTGGTCTA CAGTGTGAGT TCTAGGATAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTCAA AACCAAAAGA CATGTTTAAT TAATGATGTG TACTAGAACA
  TTCATAGCAA TGGTATTTTT TAATAGTCTC ATAACTTTAA AACGAAGTCA GATAACTTTG
  W
  TGACTCAGAT TCCATTTTAA CCTTCTTATT CTTGAAGCAG GGCTTAGTAC TTCACCTTCA
  ACATAACTTC CAGTTCTCCA TGTCTGCTAA GCTTCTCAGT GTGGTGGTCC AACAATCTAT
  ATTCCTACAG CATAACAGGC ATGACCTATG CCCCCGCACT GTGTCAGCCT TCCTTCCACA
  CTGAAACCAC ATTAAATTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134252168	ENSMUSSNP3319591	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108210669					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:97724564 () rs orientation: forward

Symbol	Name	Function Class
Ophn1	oligophrenin 1	within coordinates
Rr5052	regulatory region 5052	1637 bp proximal
Rr8080	regulatory region 8080	1789 bp proximal