rs108211354 SNP Detail

Summary

• ID
  rs108211354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGTGCC TCACAGGCCA
  CTGTGCCCAT TTTGAGTCTA AGTAGAAATT CATCCTTTCT TTTTTTTTTT TTTGTTTGTT
  TTGTTTTGTT TTTTTTCGAG ACAGGGTTTC TCTGTGTAGT CCTGGCTGTC CTGGAACTCA
  CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCT GCCTCTGTCT CCCGAGTACT
  R
  GGATTAAAGG CGTGCACCAC CACGCCCGGC GAAATTCATC CTCTCTTCAA CTTAATTTAA
  AGCCCAAGTT CAAATTAAAA CACCACCAGA ATTAAGAGTC CAAGAAGAGC ACTAAAGAAC
  AAAAAAATTA GGCAAAACTG TAAAGCTTCT CACCTGGAGA ATTCTACTTT TCTGGAGATT
  CAGTCTTGCC TGCACATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147254498	ENSMUSSNP4360972	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A		G
ss325641573	CHEV_18_61354003	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108211354					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327421 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	222 bp distal
Rr356345	regulatory region 356345	26 bp proximal
Tssr153542	transcription start site region 153542	1849 bp downstream