rs108214295 SNP Detail

Summary

• ID
  rs108214295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53875735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGCAGCA TCCAGGTTCT
  CATTCCTACT CCCCACTGTA CAGCCAGGAT GGATAAACCT GGTAGATGAC TTCCCTTCCG
  GGACATTCTG GTTGTCGTGT TTTCTGGAGC TTTAAGGACC TTGGGGTCTC AAGCATGCCC
  TGCCCATTCC TTGTGGTCAC CTCCTGTTTA TCGATGCAGT CACAGCACCT GCTGTGCCTT
  Y
  CTGAGAGGGC TCCAGTGCGG TGCCTTATGC ACACAAATAT GCTTTGGAAT CGCTAAAAGC
  AAAAATCAGG AGGTCTGGGG TGGGGTCTGA GGAGTTACAT TTCCAACAAA GCCCCCCAGG
  AGATGTGAGT GGCAACTGAG AATACTTTCC ACGAAGCAAG TATATTACTA CTTTTGAATT
  CTGCAGAGGA GCTGGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398495074	MGP_WTSI_17_53708032	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108214295					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398495074	MGP_WTSI_17_53708032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53875735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	145 bp distal
Kat2b	K(lysine) acetyltransferase 2B	within coordinates
Rr339992	regulatory region 339992	within coordinates
Rr339993	regulatory region 339993	865 bp proximal
Rr392748	regulatory region 392748	1088 bp upstream
Tssr145221	transcription start site region 145221	1944 bp downstream
Tssr145222	transcription start site region 145222	1684 bp downstream
Tssr145223	transcription start site region 145223	1421 bp downstream
Tssr145224	transcription start site region 145224	1397 bp downstream
Tssr145225	transcription start site region 145225	1386 bp downstream
Tssr145226	transcription start site region 145226	247 bp downstream
Tssr145227	transcription start site region 145227	1530 bp upstream
Tssr148709	transcription start site region 148709	375 bp upstream
Tssr148710	transcription start site region 148710	351 bp upstream