rs108219205 SNP Detail

Summary

• ID
  rs108219205
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85391920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG TGAGTGACGG TGTCGGGGAA
  A
  GGGTGGAAGG GAGCCGTCTC GTAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145391637	ENSMUSSNP2096144	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322751243	CHEV_8_87189190	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108219205					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85391920 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	265 bp upstream
Cpgi20703	CpG island 20703	780 bp distal
Cpgi20704	CpG island 20704	within coordinates
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368565	regulatory region 368565	1091 bp downstream
Rr368566	regulatory region 368566	133 bp downstream
Rr666565	regulatory region 666565	1947 bp distal
Rr666566	regulatory region 666566	1053 bp distal
Rr666567	regulatory region 666567	147 bp distal
Rr666568	regulatory region 666568	within coordinates
Tssr2627	transcription start site region 2627	153 bp downstream
Tssr78425	transcription start site region 78425	1053 bp downstream
Tssr78426	transcription start site region 78426	1034 bp downstream
Tssr78427	transcription start site region 78427	726 bp downstream
Tssr82110	transcription start site region 82110	1336 bp upstream