rs108219839 SNP Detail

Summary

• ID
  rs108219839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:35818871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGAGAAG AAGGCAGCCT TAGCCACACC CTCGAGTGCC
  CCTGCCGTTC TATTGCTCAT ACATCGATTG ATATCCCTGT TTCAACTTTG AAAAAAAAAA
  W
  TTTTTTTTTT TTTGTGGTGT GTGCATGCCT GCTACTGTAC ACCTGTGGGC GTCAGAGGTG
  GTCCTCTGCA CCCTCCGGCC AGTACCGCAT CCAGGGTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145536478	ENSMUSSNP2156378	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss325377363	CHEV_17_35644919	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108219839					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:35818871 () rs orientation: forward

Symbol	Name	Function Class
Gm19553	predicted gene, 19553	1103 bp downstream
Pou5f1	POU domain, class 5, transcription factor 1	within coordinates
Rr366753	regulatory region 366753	1231 bp downstream
Rr392563	regulatory region 392563	914 bp upstream
Rr526531	regulatory region 526531	469 bp proximal
Rr526532	regulatory region 526532	1504 bp proximal
Tssr144379	transcription start site region 144379	1925 bp downstream
Tssr144380	transcription start site region 144380	1905 bp downstream
Tssr144381	transcription start site region 144381	1720 bp downstream
Tssr144382	transcription start site region 144382	1705 bp downstream
Tssr144383	transcription start site region 144383	1635 bp downstream
Tssr144384	transcription start site region 144384	1559 bp downstream
Tssr144385	transcription start site region 144385	1530 bp downstream
Tssr144386	transcription start site region 144386	1436 bp upstream
Tssr144387	transcription start site region 144387	1460 bp upstream