rs108220850 SNP Detail

Summary

• ID
  rs108220850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144176634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggcctccC ATGCCAGGTA TACATGTGTA
  CTtgttaagt ctcagaaacc caggataaat ggccgactgg gttcctatta acataaggag
  gcagaccctg gccagctagc gctatcagca ctactcagta cctGAGAGCA AACTGTTACT
  Y
  GATCATcaca cacacacaca cacacacaca cacacacaca cacacacaca cacaTCGATA
  GATACACACT CAAGAAAATC ACTTACAAGT TACTTTTTAT TCCTGGCCCG TTGATTCAAC
  ACCGTTTCTT CTCTCTGCCC CATCCAGGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144608971	ENSMUSSNP7032226	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321709560	CHEV_5_145000693	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108220850					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144176634 () rs orientation: forward

Symbol	Name	Function Class
2900089D17Rik	RIKEN cDNA 2900089D17 gene	1957 bp downstream