rs108221280 SNP Detail

Summary

• ID
  rs108221280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144939965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG AGAATATCCA AGTTCAAGGT
  K
  CCTGGAGGAT GCAGCCAGAC TGGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147849011	ENSMUSSNP1753564	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321412961	CHEV_4_144803298	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108221280					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144939965 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	836 bp proximal
Rr103536	regulatory region 103536	166 bp distal
Rr103537	regulatory region 103537	290 bp proximal
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	68 bp downstream
Tssr40194	transcription start site region 40194	534 bp upstream
Tssr40195	transcription start site region 40195	886 bp upstream
Tssr44484	transcription start site region 44484	610 bp upstream
Tssr44485	transcription start site region 44485	544 bp upstream
Tssr44486	transcription start site region 44486	261 bp downstream
Tssr44487	transcription start site region 44487	315 bp downstream
Tssr44488	transcription start site region 44488	418 bp downstream
Tssr44489	transcription start site region 44489	510 bp downstream
Tssr44490	transcription start site region 44490	803 bp downstream
Tssr44491	transcription start site region 44491	970 bp downstream
Tssr44492	transcription start site region 44492	1195 bp downstream
Tssr44493	transcription start site region 44493	1356 bp downstream
Tssr44494	transcription start site region 44494	1590 bp downstream
Tssr44495	transcription start site region 44495	1651 bp downstream
Tssr44496	transcription start site region 44496	1720 bp downstream
Tssr44497	transcription start site region 44497	1843 bp downstream
Tssr44498	transcription start site region 44498	1968 bp downstream