rs108222117 SNP Detail

Summary

• ID
  rs108222117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47748726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAAACT ACTGGAAATA
  AATTGGCCCT TCCCCAGCTC CGGCTATGGG ACACTCCTAT CTCTTTGTCA ATCTCCAGTT
  TATACACTCT TAACTGGGGG GAACCCCGGG AAAATGGGGG AACGGTACTC ACTTCTTGTT
  TTTGATCCAT GCTTCTGGTG TCTGAAGTGG GAGACAGGGG TGTGTCACCA ATCACTCCCT
  M
  GTTTTACCTG CCTTCCTCAT CACCTTTATG GTACTTGGAG TTCTGTTCAA CACCCAAATG
  ATTACATTGG GGGCCAGGGC AAGAACAAGA TGTCACCTTT CCCTGACCTA AAGATCTCTC
  ACCAGCAGGC AAGCAAAACT AAGAGTATGC CCTCCTGCCC TTTGGGGGCC TCTGCTGGAA
  GACAGCCTTT AGGTGCATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398346297	MGP_WTSI_17_47574750	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108222117					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398346297	MGP_WTSI_17_47574750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47748726 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	within coordinates
Cimip3	ciliary microtubule inner protein 3	425 bp upstream
Cpgi9259	CpG island 9259	409 bp distal
Rr339933	regulatory region 339933	within coordinates
Tssr144911	transcription start site region 144911	1206 bp downstream
Tssr144912	transcription start site region 144912	1193 bp downstream
Tssr144913	transcription start site region 144913	1162 bp downstream
Tssr144914	transcription start site region 144914	1143 bp downstream
Tssr144915	transcription start site region 144915	1058 bp downstream
Tssr148437	transcription start site region 148437	554 bp upstream
Tssr148438	transcription start site region 148438	410 bp upstream