rs108222719 SNP Detail

Summary

• ID
  rs108222719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80038510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGCCCTT CCTTGTGAGT
  GCTACCCCAG TTCCCACGGC AGTCACAGTT CTGGTGGGCC TTTGTTGGGC CGGGAGTGCT
  CACTCCTAAT GCATGGCCTT TTATTCACCC CTTACTTATT CAGACCCTCT AAACTGGCTG
  CTGTCATCAC CTCACAGGCT TGTCCATGAG AGGAAACTGA GGCATGGAGA CATTCAGGCG
  Y
  CTGGCCAGTC ATAGGCTGGT GATGGACCCA GACGTCCTCA ATCTAGAACA TGTGTCCTTT
  ACCACTGTCT AGCTTGGGTG GGGAACATCT CAGAAGTGTC TGTGTGGTGC CAGTCCAGCA
  TTGTGTCACA GCCAGAGACT CCCTCAGCAG GTGCCAGGAC TGGCTAAGTT AACAGTCCTT
  CCCTCCCAGT CTGAACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148214168	ENSMUSSNP5011987	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108222719					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80038510 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	910 bp distal
Rr310675	regulatory region 310675	1908 bp proximal
Rr314587	regulatory region 314587	110 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates