rs108225221 SNP Detail

Summary

• ID
  rs108225221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC ATCGAAGGTA TGATGCATGC
  Y
  TGTAGTCTCA GCATTTAGGA GGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148973481	ENSMUSSNP2857692	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss324333672	CHEV_13_46595659	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108225221					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653766 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1613 bp upstream
Cpgi5539	CpG island 5539	1493 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1387 bp proximal
Rr478916	regulatory region 478916	1569 bp proximal
Rr478917	regulatory region 478917	1670 bp proximal
Tssr119597	transcription start site region 119597	1569 bp upstream
Tssr119598	transcription start site region 119598	1608 bp upstream
Tssr119599	transcription start site region 119599	1747 bp upstream
Tssr119600	transcription start site region 119600	1759 bp upstream
Tssr119601	transcription start site region 119601	1823 bp upstream
Tssr119602	transcription start site region 119602	1851 bp upstream